Template-based Modeling Results for YDEO_ECOLI


  Submitted Primary Sequence

>Length 253
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
CCEEEEEEEECCCEEEEECCEEEEECCCCEEEECCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
4311000000132010102322000241100002311202021134202000011300220031022311212121321212301210022002102223323330021000000100120321021123222200110130023212220203100210110211032104424120120011010210221133302012002202121111002001421310132003213322432232232232134
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
1MUSTER3gbgA0.1620.9012.174threading_1YINDYKMFWISGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYIL------NKDLLLWNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEK--KYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
2SPARKS3gbga0.1480.9053.624threading_2INDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYIL-----GNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKV---EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
3PROSPECT23gbgA0.1660.9052.919threading_3KSFQTNVYRMSKFDTYIFCLVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYIL------GNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYN--SIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLT----------------GV
4PPA-I3gbgA0.1530.9052.692threading_4INDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYI------LGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEK--KYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
5HHPRED-l3gbg_A0.1670.8974.155threading_5INDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLLNINVSVITISDSFIRSLKSYILG------NKDLLLNCEHNDIAVLSEVVNGFREIN-YSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
6HHPRED-g3gbg_A0.1740.8853.768threading_6INDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLENINVSVITISDSFIRSLKSYILG---------DLLNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEKKYNSI--FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
7SP33gbga0.1710.9253.804threading_7YINDYKMFWIDSGIAKLIDKVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKV--EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFML----------------TGV
8SAM-T993gbgA0.1820.8702.660threading_8YINDYKMFWIDSGIAKLIDKNSYEINSSSIILLKKNSIQRFSDENINVSVITISDSFIRSLKSYI--------LGNKDLLLWNCEHNDIAVLSEVVNGFREINDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY-----------------------
9MUSTER2k9sA0.1730.4111.269threading_9-----------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQGISVLSWREDQRISQAKLLLSTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE------------------
10SPARKS3ooua0.2380.3992.174threading_10------------------------------------------------------------------------------------------------------------------------------------SPIIQNVLSYITEHFSEG-SLKTLGNDFHINAVYLGQLFQKEGEHFTDYLNRYRVNYAKEELLTKDNLTIIAGKSGYTDA-YFYRQFKKHTGETPNRYRKIHQ------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.483 to 1d5yA
SCOP code=a.4.1.8
TM-score=0.485 to 1d5yA
SCOP code=a.4.1.8
TM-score=0.481 to 1d5yA
SCOP code=a.4.1.8
TM-score=0.484 to 1d5yA
SCOP code=a.4.1.8
TM-score=0.487 to 1d5yA
SCOP code=a.4.1.8