Template-based Modeling Results for YDFU_ECOLI


  Submitted Primary Sequence

>Length 349
MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
CCCCCCCEEECCCEEEEECCCHHHHHHHCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEECCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
5532121110120000002113200310211100022213203402211012232222413200210123300220110100120013303002032131112100011023000000100112124321300220022000100010011102123323010000000000220131013200230021323422222431311213120110022113312213112322323333210102023211311231233232013200300231200000210110000001021122231111000000230021114111201441121020012002200311224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
1PROSPECT23qxyA0.1030.8881.394threading_1LDAVSRQGTVAGYGMVARES-------VQAGELLFVVPRAALLSQHTCSI------------GGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYVLPFMEAHPDLFSLRVRSLELYHQLVA---------LVMAYSFQEPLEKEPNSPPKGHNTYGQMANWQLIHMYGFVEPY---------PDNTDDTADIQMVVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGPAEEFRELKDQKREEGSLTITNIP--KLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVYALTS
2HHPRED-l3g27_A0.2540.2035.206threading_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKAARGIPGVCNGNPETVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVGYAKECALEG-ARTQVIWLKEGVI-
3PROSPECT21l5aa0.0620.9281.241threading_3MLLAINLDTVA--HSLRLTGPHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAE-----------------PLAWRQIEQDLQR-SSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLD---GYGMMLFEQRLSQHYQS--LLSGQTPTAAFKPYQSYLEEEAASHRYWQDKQFWQGYLREAPDLTLTSATYDPQSYTLNSQLNHLLLKLANANQIGWGSVAANVPGLMVNSLPLLRLSAQQGNYLKQSGQAIRSLYLHIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGIQSHWQSHCERFPRFFEQLLARFQARLLAEPAA
4HHPRED-g3g27_A0.2540.2034.380threading_4---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKAARRIPGVCNGNPETVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVGYAKECALEG-ARTQVIWLKEGVI-
5PROSPECT21i8ta0.0840.8191.213threading_5MY-----------DYIIVHIGGNAYTEDCEGIQIHKYGAHIF-----------------------HTNDKYIWD----------YVNDLVEFNRFTNSP-------LAIYKDKLFNLPF---------NMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPNLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDYTKLIEKMLEGVDVKLGIDFLKDKDSLASKAHRIIYTGPIDQYFDYRFGALKFETERHEFPNFQGNAVINFTDANHKHFDYVETKHLEWKVGDEPYYPVNDNKNMELFKKYRELASREDQVISAALYQVKNIMSTD---
6HHPRED-l3plw_A0.2470.2554.087threading_6----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRTPTAEERRIANALGALPCIACYMHGISNEVSLHHIAGRTAPGCHK-KQLPLCRWHHQPVHADKKEFTLLNKSEMELLADAYEMA-NIMH--
7PROSPECT21pswA0.0860.8341.208threading_7-------------KILVIGPSRTLQARYPQAIIDVAPAWCRPLLSRPEEAIPEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGERYGLLNDVRVLDKEAWPLVERYIALAYDKGIRTAQDLPQLQVSEGEKSYTCNQFSLSSERPIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGY----------QVVLFGSAKDHEAGNEILAALNTEQQ----------AWCRNLAGETQ--------------LDQAVILIAACKAIVTNDSGLHVAAALNPDFTPPLSHKARVIRLITGEGYHQSLIDITPQ------RVLEELNALLLQEE-----A
8HHPRED-g3plw_A0.2360.2553.345threading_8---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR-TPTAEERRIANALGALPCIACYMHGISNEVSLHHIAGRTAPGCHK-KQLPLCRWHHQPVHADGKEFTLLNKSEMELLADAY-EMANIMH--
9HHPRED-l2qgp_A0.2300.2121.191threading_9-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKREKEKARELRRSQWWKIRGICHYCGEIFPT-DHLVPVVRGGK---STRGNVVPACKECNNRKKYLPVEWEEYLDS-------L-----------
10HHPRED-g3g27_A0.1470.2151.558threading_10------------------------------------------------------------------------RKAARGRECQ----VR-IPCNGNPETVLAH-----KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEG-ARTQVIWLKEGV---I--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.556 to 1p0yB
SCOP code=a.166.1.1
TM-score=0.344 to 1p71A
SCOP code=a.55.1.1
TM-score=0.704 to 1l5aA
SCOP code=c.43.1.2
TM-score=0.332 to 1p71A
SCOP code=a.55.1.1
TM-score=0.593 to 1i8tA
SCOP code=c.4.1.3