Template-based Modeling Results for YDGD_ECOLI


  Submitted Primary Sequence

>Length 273
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEEECCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
421110000000000000011232312422333122001032221202322301110000011231100000000210000000001133412112000010012322232211102021223212202010311212221121000000022112222100113123222222132211200000123232311101220100022221000000100311110000021240000000000112043222031100001002220221255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
1MUSTER2olgA0.1940.9082.025threading_1-------------------RNRRPELLPNYQVEADKILNGDD-----TVPEEFPWTAMIGYKNSSNFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFIRPVCLPQPEEVQVGQRLTVVGWGRTETGQYSTIKQKVVHAEQCAKTFGAAGVRVSQLCDSCGGDSGGPLLAERNQQFFLEGLVSFGATCG-TEGWPGIYTKVGKYRDWIEGNIRP
2SPARKS1h8d\.10.1980.9082.966threading_2-------------LRPLFEKKSLEDKTERELLESYIIVEGSD-----AEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRY----ERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQVERPVCKDS-TRIRITDNMFCDACEGDSGGPFVMKSNNRWYQMGIVSWGEGCDRDGKY-GFYTHVFRLKKWIQKVIDQ
3PROSPECT23cp7A0.1800.7512.048threading_3-------------------------------------------------PADSPHIGKVFFSTNQGDVCSANIVNQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVTSAE-----------WANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQP---RGQYYSAYGYPAAAPFNGQELHSCHGTDPMGSSTQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPN-----VMFGPSGAQQNYNYASTT
4PPA-I2olgA0.1650.9082.065threading_4----------------RNRRPELLPNDCGYQVEADKILNGDD-----TVPEEFPWTAMIGYKNSSNFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP---NEEVQVGQRLTVVGWGRTETGQYVHAEQCAKTFGAAGVRVRQLCDSCGGDSGGPLLAERNQQFFLEGLVSFGATCGTEGWP-GIYTKVGKYRDWIEGNIRP
5HHPRED-l2f83_A0.1550.8531.827threading_5LDAAKSHEACKLCTNAKLSSNGSPTKNECTTKIKPRIVGGTA-----SVRGEWPWQVTLHTTSPQRHLCGGSIIGNQWILTAAHCFYGVESPKIL---RVYSGI-LNQSEIKEDTSFFGVQEIIIHDQYKM--------AESGYDIALLKLETTVDSQRPICLPSKGRNVIYTDCWVTGWG------KQKAKIPLVTNEECQTHKMICA----------KGDSGGPLSCKHNEVWHLVGITSWGEG----ER-PGVYTNVVEYVDWILEKT--
6HHPRED-g1z8g_A0.1790.9011.717threading_6RLPHTEVISVCDCPRGRFLAAICQDCGRR-KLP---IVGGRD-----TSLGRWPWQVSLR--YDGAHLCGGSLLSGDWVLTAAHCFPERNRLSRWRVFAG------------AVAQASPHGLQLGVQAVVYHGFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAA---GQALVDGKICTVTGWGNTQYYGIISNDVCNGADMFCAGYPEGGIDACQGDSGGPFVCEDTPRWRLCGIVSWGTGCALAQKP-GVYTKVSDFREWIFQAIKT
7SP31h8d\.10.1980.9082.844threading_7LRP-------------LFEKKSLEDKTERELLESYIIVEGSD-----AEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRY----ERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQVERPVCKDS-TRIRITDNMFCDACEGDSGGPFVMKSNNRWYQMGIVSWGEGCDRDGKY-GFYTHVFRLKKWIQKVIDQ
8SAM-T991jwtA0.1790.9231.860threading_8-TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSD----AEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERLEKIYIHPRYNWR------------ENLDRDIALMKLKKPVASDYIHPVCLPDRETAASL-LQAGYKGRVTGWGNLKETWIVERPVCKDSTRITDNMFCAGGDACEGDSGGPFVMKFNNRWYQMGIVSWGE---GCDRDYGFYTHVFRLKKWIQKVIDQ
9MUSTER2anyA0.1930.7991.999threading_9------------------------------------IVGG-----TESSWGEWPWQVSLQVKLAQRHLCGGSLIGHQWVLTAAHCFDGLPLQD---VWRIYSGILELSDITK---------DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYQKPISLPSKGDTSIYTNCWVTGWGFSKEKGEIQNI-PLVTNEECQKRYMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCA-RREQPGVYTKVAEYMDWILEKTQS
10SPARKS1xx9a0.1940.7912.918threading_10------------------------------------IVGGTA-----SVRGEWPWQVTLHTTSPTQHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRVYSGILNQSEIKED-----TSFFGVQEIIIHDQ--YKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR---NVIYTDCWVTGWGYRKLRDKVTNEECQKRYRGHKITHKMICDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERP-GVYTNVVEYVDWILEKTQA

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.740 to 1pytD
SCOP code=b.47.1.2
TM-score=0.847 to 1bmlA
SCOP code=b.47.1.2
TM-score=0.817 to 1jwtA
SCOP code=b.47.1.2
TM-score=0.740 to 1p3eA
SCOP code=b.47.1.1
TM-score=0.713 to 1pytD
SCOP code=b.47.1.2