Template-based Modeling Results for YDIA_ECOLI

Submitted Primary Sequence

>Length 277
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
5542220100000101120020002000120222111000111322220320121022013322230000000013301200231102011002100110032042312221332111223112201110100100020120211430330100000012113110000000221010010000132232220222122132200000011320120023224324101131022002201200342301001013310220022002102213523
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
1	PROSPECT2	1eyea	0.111	0.845	1.150	threading_1	-----PVQVMGVDGGCYLDLDDAVKHGLAMAAAGAGIVDV--GGETSRVIPVVKELAA------QGITVSIDTMRADVARAALQNGVSGGRADPAMGPLLAEAHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA------GVDPARLVLDPGLGFAKTAQHNWAILHA-------------------LPELVATGIPVLVGASRKRFLGAL--LAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHD--VRASV-DAIKVVEAWMGAE
2	HHPRED-l	2iyv_A	0.151	0.455	1.443	threading_2	-----------------------------------------------------------------------------------------------------------------------------------------------------APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTSIVLSLGGGVTSPGVRAAAGHTVVYLEISAAEGVR-RTGGNTVLGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPS-
3	HHPRED-g	2iyv_A	0.194	0.596	1.135	threading_3	-----AKAVLVGLPGSGKS--TIGRRLAKALG-------VGLLDTD----VAIEQ------RTGRS-----------IADIFATD-------------------------------G------EQEFRRIEVVRAALADHDG----------VLSLGGG-AVTSP--------------------------GVRAALA--GHTVVYLEISAAEGVR-RTGGNTVLAGPDREKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSE
4	PROSPECT2	1b5ta	0.087	0.874	1.134	threading_4	--GQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDDELRTIARDY----------------WNNGIRLRGDLPPGSGKPEMYASDLVTLLKEV---------------ADFDISVAAYPEVHPELLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDIPGILSNFKQAKKFADQMFDGLDDDAETRKLVGANIAMDMVKIEGVKDFHFYTLNRAEMSYAICHTLGVRPA--
5	HHPRED-l	1via_A	0.144	0.426	1.390	threading_5	------KN------------------------------------------------------------------------------------------------------------------------------------------------IVFIGF-GSGKSTLARALAKDLDLVFLDSDFLATGGGFVNVS--NLEKAGFCIYLKADFEYLKKRLDKDEIRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK------
6	HHPRED-g	1via_A	0.127	0.567	1.043	threading_6	----KN-IVFIGF-GSGKS--TLARALAKDLDL-------VFLDSDFLIEQK----------FNQ-----------------------K-------VSEIFEQ------------KRE----NFFREQEQK-ADFFSS------------CEKACI---ATGGGF--------------------VN--VSNL-----EKAGFCIYLKADFEYLKKRLDKDEKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK------
7	PROSPECT2	1q3tA	0.127	0.769	1.126	threading_7	MKTI----QIAIDGPASSGKSTVAKIIAKDFGFTYLD-----------TGAMYRAATYMALKNQLGV-----EEVEALLALLDQHPISFGRSETGDQLVFV--------GDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV------VLPQAELK---------------------------IFLVASVDRAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSYLDTTGLNIQEVVEKIKAEA---EKRM
8	HHPRED-l	1kag_A	0.174	0.415	1.334	threading_8	--EK--R------------------------------------------------------------------------------------------------------------------------------------------------NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQVLATGGGSVKRETRNRLRGVVVYLETTIEKQLART---PLHVETPPREVLEALANERNPLYEEIADVTI-----SAKVVANQIIHMLE------
9	HHPRED-g	1zuh_A	0.208	0.538	1.042	threading_9	-----QHLVLIGFMGSGKS--SLAQELGLALK-------LEVLDTDM----IISE------RVGLS-----------VREIFEEL-------------------------------G------EDNFRMFELIDELKTLKTP---------HVISTG----GGIVM------------------HE---------NLKGL-GTTFYLKMDFETLIKRLNQ------LNNLTQAKELFEKRQALYEKNASFIIDARG-GLNNSLKQVLQF--------
10	PROSPECT2	1aj0_	0.070	0.874	1.110	threading_10	MDLSHPHVMGILNHNSLIDAVKHANLMINAGATIIDVGGESTRPSVEEELQRVIPVVEAIAQRF-EVWISVDTSKPEVIRESAKVGAHIINDIRGALEAAAETMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ------AGIAKEKLLLDGFGFGKNLSHNYSLLAR--------------------LAEFHHFNLPLLVGMSRKSMIGQLLN--------VGPSERLSGSLACAVIAAMQGAHIIRVHDKETVEAMRVVEATLSAKENKR

Predicted Tertiary Structure


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TM-score=0.821 to 1eyeA SCOP code=c.1.21.1	TM-score=0.549 to 2iyvA SCOP code=c.37.1.2	TM-score=0.690 to 2iyvA SCOP code=c.37.1.2	TM-score=0.768 to 1v93A SCOP code=c.1.23.1	TM-score=0.398 to 1viaA SCOP code=c.37.1.2