Template-based Modeling Results for YEDK_ECOLI

Submitted Primary Sequence

>Length 222
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
CCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHCCCCEEECHHHHHHHHCCCCCCHHHHHHHHCCCCCHHCEEEEECCCCCCCCCCCCHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
322100033212100210121133213232321122211312200000233321101000011121213323100011220221310121132010000010001024334422100012332200000000001244232010000000211310121232100001130022003332213300110011111231010010132223133312201224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
1	MUSTER	2icuB	0.967	0.946	3.414	threading_1	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWDKP-PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQE-ISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
2	SPARKS	2icua	0.976	0.932	5.801	threading_2	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGP----PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQE-ISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
3	PROSPECT2	2icuA	0.971	0.932	3.609	threading_3	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGP----PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQEI-SGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
4	PPA-I	2icuB	0.962	0.946	4.070	threading_4	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWDKPP-LINARVETAATSR-FKPLWQHGRAICFADGWFEWKQ------PFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQE-ISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
5	HHPRED-l	2icu_A	1.000	0.928	7.192	threading_5	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPG----PPLINARVETAATSR-FKPLWQHGRAICFADGWFEWK------QPFFIYRADGQPIF-AAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREW-RQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQP-
6	HHPRED-g	2icu_A	1.000	0.932	5.839	threading_6	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPG----PPLINARVETAATSR-FKPLWQHGRAICFADGWFEWK------QPFFIYRADGQPIF-AAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREW-RQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
7	SP3	2icua	0.942	0.932	5.805	threading_7	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGP----PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPIFAAIGST-PFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQEISG-KEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
8	SAM-T99	2icuB	0.981	0.946	5.565	threading_8	--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWDKPP-LINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREW-RQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
9	MUSTER	2bdvA	0.382	0.932	3.142	threading_9	-CGRIAQKSAPEDYVEILWP------NARLVAGPRYNIPPGTRPLTHRLVDQAEALARLPWGYKPHGSSF--FINAKLETIERHGWPWKLIGTGRILVPADGWYEWKALGPKPAKQPYYIHGDAPLLFAGLSAWRRGELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILR-AGLPETAFSWYPVRQEVGSSKYQLPD-----
10	SPARKS	2bdva	0.367	0.932	5.539	threading_10	-CGRIAQKSAPEDYVEIL------WPNARLVAGPRYNIPPGTRPLTHRLVDQAEALARLPWGYKPHGSS--FFINAKLETIERHGWPWKLIGTGRILVPADGWYEWKALGPKPAKQPYYIHGDAPLLFAGLSAWRRAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATP-VARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPD-----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.798 to 2bdvA TM-score=0.996 to native SCOP code=d.303.1.1	TM-score=0.798 to 2bdvA TM-score=0.995 to native SCOP code=d.303.1.1	TM-score=0.792 to 2bdvA TM-score=0.987 to native SCOP code=d.303.1.1	TM-score=0.793 to 2bdvA TM-score=0.985 to native SCOP code=d.303.1.1	TM-score=0.794 to 2bdvA TM-score=0.993 to native SCOP code=d.303.1.1

Experimental Structure

Download 2icuB

SCOP code=d.303.1.1