Template-based Modeling Results for YFBK_ECOLI


  Submitted Primary Sequence

>Length 575
MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
54333111000000001100233333333333332223332222332223323322222322021202211222122232331222131131422222322222133133121201132210000010220012101200332211232111011012111231323233212223312000101012122343110010102143342331210000000001102213210200120022004202331000000011202000221222112102200320213200200100110022024222422110000001122222222131022003323422010000000123122200110032130100102112101300210033111222320202020132211202111233232323322201020120123220100010102344322220200132422333322310102021223434211102121222232223101010000000220321312230203100200240333223111010020021023124334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
1MUSTER1pcxA0.1320.8420.901threading_1PMN------QLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDRSTLNAVPKNSSLLKKSK---VIRPYQHLYDDIDPPPLNEDGLIVRCRRCR-----------SYMNPFVTFI----------------QGRR----RCNFCRLANDVPMQMDQPKSRYDRN----------EIKCA--------VMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIDERTRISILCVDNAIHYFKIPLDKACRQNIETLLTKINLITNFALGPALKSAYHLIGGVG-----GKIIVVSGTLPNLGIGKDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGPNDIVKFSTEFAKHISMDFCMETVMRARGSTG-LRMSRFYGHFFNR------SSDLCAFSTMPRDQSYLFEVNVD-------------------ESIMADYCYVQVAVLLSLNNSQRIITLAMPTTESLAEVYASADQLAIASFYNSKA--VEKALNSSLDDARVLINKSVGGAPLRLCANLRMFPLLMHSLTKHMA
2SPARKS1shtx0.2160.3062.426threading_2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFDLYFVLDKSGSV-ANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3PROSPECT23efoB0.1210.9081.473threading_3AMGS--PIQVIENDRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGFCNCVNDVP--------PFYFQHLDHIGRRLDHYEKPEL---------------------------------SLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEERVGFITYNKVLHFFNVKSNLAQQSVIHNLLDQISNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNQMHLDRQQFLNDLRNDIKKIGFDAIMRVRTSTGFRATDFFGGILM-------NNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDFKAVLHQPLKVIQTAHMLACYRKNCASPSAASQLILPDSMELIQGIFNVPSFPYSQQLRMIMGIIKEICQLLN
4PPA-I1shuX0.2180.3111.126threading_4-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SCRRAFDLYFVLDKSGSVAN--NWIEIYNFVQQLAERFSPEMRLSFIVFSSQATIILPLGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5HHPRED-l3hrz_D0.1460.8592.933threading_5------RLFYPYPVQTRTCRSTG----SWSTLKQDQK--TVRKAECRAIRPDFENGEYWSDEDGYTL-RGSANRTCQGRWSGQTAICDNGYCSNP--GIPIGTKVGQYRLDSVTYHCSR---GLTLRGSQ-----RRTCQEGGSWSGTSCQDPQEVAEAFLSSLTET------------------------------------KRKIVLDPSGSMNIYLVLDGSGSIGAS-DFTGAKKCLVNLIEKVGVKPRYGLVTYATYPKIWVKVSEASNADWVTKQLNEINLKSGTNTKKALQAVYSMMSWP--NRTRHVIILMTDGLHNMGG-DPITVIDEIRDLREDYLDVYVFGVGPL-VNQVNINALASKKEQHVFKVKDMENLEDVFYQMIDESQSLLCGQAKISVIRPS---CMGAVVSEYFVLTAAHCFTSIKVSVGGEK---RDLEIEVVLFHPNYNINGK-----KEAGIPEFYDYDVALIKL--KNKLKYGQTIRPICLPCTALRLPPTT--TCQQQKEELLPAQDIKLTRKNKGSCERDAQYAPGYDKVDIS-EVVTFLNTCRGDSGGP-
6HHPRED-g1q0p_A0.2060.2872.539threading_6---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SMNIYLVLDGSDSI-GASNFTGAKKSLVNLIEKVAVKPRYGLVTYATYPKIWVKVSESSNADWVTKQLNEINLKSGTNTKKALQAVYSMMSWPDDVETRHVIILMTDGLHNMGGDPITVIDEIRDLPREDYLDVYVFGVGP-LVNQVNINALASKKDNEVFKVKD------------------LS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7SP31shtx0.2160.3062.561threading_7--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFDLYFVLDKSGSVA-NNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8SAM-T993ibsA0.3060.2963.071threading_8--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGVEVIIALDISNSLAQDVRLEKAKRLISRLVDELD-NDKVGI-VFAGDAFTQLPIT--SISAKFLESISSLISKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEG-----GAVEAAKAAAEKGIQVSVLGVGP-ELNEG-CQEIAKDGKGIYVRVDNSNSAQKAISQEISKAKS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9MUSTER3efoB0.1250.8750.853threading_9MGS---PIQVIENDRASR-GGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQ-----------IPLAAVIKPFATIPSNESPLYLVNHGESGPVRKAYMCPFMQFI----------------GGRR----QCGFCNCVNDVPPFYFQHLDHIGRRL---------DHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKITSAIRVGFITYNKVLEVFVPLLDQESQSVIHNLLDQISNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNQMHLDRQQFLNDLRNDIEKIGFDAIMRVRTSTG-FRATDFFGGILMN------NTTDVEMAAIDCDKAVTVEFKHD------------------DKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAKAVLHQPLKVIREILVNQTPSAAMKVLPVYMNCLLKNCVLLSRPE
10SPARKS2x31a0.1940.3131.980threading_10-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEMSDRVLIFAVDASGSAAV---LSEAKGAVELLLGRAAARDHVSLITFRGTAQVLLQPSR--SLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAAMRPNPALVDLARTMDAHYIALP--RATAHKMADVLGAALEA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.735 to 1pcxA
SCOP code=a.71.2.1
TM-score=0.686 to 1pcxA
SCOP code=a.71.2.1
TM-score=0.619 to 1shuX
SCOP code=c.62.1.1
TM-score=0.683 to 1pcxA
SCOP code=a.71.2.1
TM-score=0.644 to 1shuX
SCOP code=c.62.1.1