Template-based Modeling Results for YFDX_ECOLI

Submitted Primary Sequence

>Length 211
MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN
4432100000000000000000210212132122212212211120220032012002101001110222223302300220021023122111310331441323311000010100012212112312200220232123123300021021021101000110103302200110131034422130120022023001000110236
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN
1	MUSTER	3dzaA	0.557	0.834	2.285	threading_1	-----------------------------APAAAATTQVQKEAADVLQVA-VQGANARDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAK-IADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQ-YLPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSELV---
2	SPARKS	3dzaa	0.585	0.834	4.536	threading_2	-----------------------------APAAAATTQVQKEAADVLQVAVQGANA-RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAKI-ADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYL-PLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSELV---
3	PROSPECT2	3dzaA	0.557	0.834	2.559	threading_3	APA-----------------------------AAATTQVQKEAADVLQVAVQGANA-RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAK-IADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGV-IENQYLPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSE---LV
4	PPA-I	3dzaA	0.551	0.834	2.654	threading_4	-----------------------------APAAAATTQVQKEAADVLQVA-VQGANARDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAK-IADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIEN-QYLPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSELV---
5	HHPRED-l	3dza_A	0.609	0.825	10.197	threading_5	------------------------APAAAATTQ-----VQKEAADVLQVAVQGANA-RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAK-IADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYL-PLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSE-----
6	HHPRED-g	3dza_A	0.592	0.825	9.231	threading_6	---------------------------APAAAATTQ--VQKEAADVLQVAVQGANA-RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAK-IADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYL-PLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSE-----
7	SP3	3dzaa	0.585	0.834	1.693	threading_7	-----------------------------APAAAATTQVQKEAADVLQVAVQGANA-RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAKI-ADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYL-PLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSELV---
8	SAM-T99	3dzaA	0.597	0.834	6.667	threading_8	--------------------------APAAAATTQVQ---KEAADVLQVAVQGANA-RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAK-IADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQY-LPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSELV---
9	MUSTER	3dzaA2	0.515	0.645	1.276	threading_9	-----------------------------APAAAATTQVQKEAADVLQVA-VQGANARDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAKI-ADRYVIINASIA----------------------------------------VIENQY-LPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEEGIVVDSELV---
10	SPARKS	3snxa	0.139	0.953	0.633	threading_10	AERLFNGAWYNLFIGYRALQCQDDASDVVSRPKYGFNSSYQAIPSDGRTSFAWYLIYKTIDNCNTAISIGDSEELRQAQGQALALRAFCYLHLVQYQFTYLKDKDAPC--VPIYTEPTTSGTKPKG---KSTVAQVYQQIFD-DLNLAQDYLTNYVRKGDGQKFKP----NTDVVNGARAYLLTGQWGEAAKAAEAARKGYSLTTTAEYEG

Predicted Tertiary Structure


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TM-score=0.502 to 1cpqA SCOP code=a.24.3.2	TM-score=0.522 to 1qqeA SCOP code=a.118.8.1	TM-score=0.522 to 1qqeA SCOP code=a.118.8.1	TM-score=0.523 to 1qqeA SCOP code=a.118.8.1	TM-score=0.505 to 1elwA SCOP code=a.118.8.1