Template-based Modeling Results for YGHD_ECOLI

Submitted Primary Sequence

>Length 178
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
5423101111120142112301200120122212213001100000000000001112111220221132133112112202200220131242222222302200120033230201101342320101012020310020022013313120210101214430201020011147
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVSAAEKPGMVNVQRLEFGRG
1	MUSTER	1uv7A	0.370	0.410	1.350	threading_1	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
2	PROSPECT2	1vid_	0.082	0.961	1.066	threading_2	TKEQRILRYVQQNAQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSAVRMARLLQNPDYAAITQQMLNFATILNGASQDLIPQLKKKYDVDTDHWKDRYLPDTLLLEKCGLLRKG-------TVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYGPS
3	PROSPECT2	1vctA	0.121	0.927	1.010	threading_3	KSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELH-----PVIKETILEGEEIIGKIQVYPES---VIVGKTLGEL-----DLATNTGVWIIAVRWIFGPNENIGRGTRTSIDHG
4	SPARKS	1uv7a	0.370	0.410	1.684	threading_4	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
5	PROSPECT2	1uv7A	0.370	0.410	1.254	threading_5	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
6	PPA-I	1uv7A	0.370	0.410	2.816	threading_6	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
7	HHPRED-l	1uv7_A	0.347	0.404	7.193	threading_7	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRG----VVEVKRLQLKR-
8	HHPRED-g	1uv7_A	0.356	0.410	6.543	threading_8	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRG----VVEVKRLQLKRG
9	SP3	1uv7a	0.370	0.410	0.661	threading_9	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG
10	SAM-T99	1uv7A	0.370	0.410	3.418	threading_10	---------------------------------------------------------------------------------------------------QPLNQVITNSTRQFNIELIRVQPRGE--QVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDR----GVVEVKRLQLKRG

Predicted Tertiary Structure


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TM-score=0.686 to 1uv7A SCOP code=d.67.4.1	TM-score=0.599 to 1i9gA SCOP code=c.66.1.13	TM-score=0.686 to 1uv7A SCOP code=d.67.4.1	TM-score=0.844 to 2bkpA SCOP code=a.7.12.1	TM-score=0.686 to 1uv7A SCOP code=d.67.4.1