Template-based Modeling Results for YGJR_ECOLI

Submitted Primary Sequence

>Length 328
MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
2010000001200220030034024010000001223102200430302200100210051320100000001100000011012351100022011121210210020034341000100101001002101200351141220100000111323322313211111221120000000000000001011212101000111332121200000112312000000211322210101022000102311212200002333211202224322201100210010024322333212102100200120042020202223244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
1	MUSTER	2poqX	0.249	0.966	2.912	threading_1	ALRWGIVSVGLISSDFTAVLQTLPEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ-GTLGDLRVARAEFGKNL-----THVPRAVDWAQAGGALLDLGIYCVQFISMVFGKPEKISVMGRRHETGVDDTVTVLLQYPGVHGSFTCSITAQLSNTASVSGTKGMAQLLNPCWCP-TELVVKGEHKEFLLPPVNGAGMSYEAKHVRECLRKGLKESPPLVESELLADILEEVRRAIGVTFPQD----
2	SPARKS	3ohsx	0.242	0.970	4.155	threading_2	ALRWGIVSVGLISSDFTAVLQTLPEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ-GTLGDLRVARAEFGKNLTH-----VPRAVDWAQAGGALLDLGIYCVQFISMVFGKPEKISVMGRRHETGVDDTVTVLLQYPGEHGSFTCSITAQLSNTASVSGTKGMAQLLNPCWCPTELVVKGEHKEFLLPPVDNGAGMSYEAKHVRECLRKGLKESPPLVESELLADILEEVRRAIGVTFPQD----
3	PROSPECT2	3evnA	0.190	0.945	4.592	threading_3	KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQA---KYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASIGEVISISSTTAYPNID-------HVTWFRELELGGGTVHFMAPYALSYLQYLFDATTHASGTATFPKGQSDSQSKLLLQLSNGLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSARTIQVD-MVSDFEKEAYHVSQMILEGQRVSHIPQLTLSGVKIIEDLYRSWGK-------EG
4	PPA-I	3evnA	0.192	0.951	3.618	threading_4	KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQA---KYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLAS-GEIGEVISISSTTAYPNI----DHVTWFRELELGGGTVHFMAPYALSYLQYLFDTITHASGTATFPKGQSDSQSKLLLQLSNGLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSARTIQVDM-VSDFEKEAYHVSQMILEGQRVSHTPQLTLSGVKIIEDLYRSWGKEG-------
5	HHPRED-l	2ho3_A	0.343	0.915	2.625	threading_5	MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVF-FKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD--QVLGADFNYAKYSSK------------------GGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNQTWLYDAGSVHELLYTMRQTAGIRF-------
6	HHPRED-g	2ho3_A	0.334	0.912	2.585	threading_6	MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFF-KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADVLGADFNYAKYS---SK------------------GGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYWLYDAGSVHELLYTMRQTAGIRF-------
7	SP3	3ohsx	0.239	0.970	4.343	threading_7	ALRWGIVSVGLISSDFTAVLQTLPRHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ-GTLGDLRVARAEFGKNLTHV-----PRAVDWAQAGGALLDLGIYCVQFISMVFGKPEKISVMGRRHETGVDDTVTVLLQYPGEHGSFTCSITAQLSNTASVSGTKGMAQLLNPCCPTELVVKGEHKEFLLPPVPKNCNGMSYEAKHVRECLRKGLKESPPLVESELLADILEEVRRAIGVTFPQD----
8	SAM-T99	2poqX	0.244	0.963	4.072	threading_8	ALRWGIVSVGLISSDFTAVLQTLPRHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLGTLGDLRVARAEFGKN--------LTHVPRAVDWAQAGGALLDLGIYCVQFISMVFGKPEKISVMGRRHETGVDDTVTVLLQYPGEVHSFTCSITAQLSNTASVSGTKGMAQLLPCWCPTELVVKGEHKEFLLPPVPKNCNGMSYEAKHVRECLRKGLKESPPLVESELLADILEEVRRAIGVTFPQD----
9	MUSTER	3evnA	0.192	0.951	2.909	threading_9	KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQA---KYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLAS-GEIGEVISISSTTAYP----NIDHVTWFRELELGGGTVHFMAPYALSYLQYLFDTITHASGTATFPKGQSDSQSKLLLQLSNGLVDIFLTTRLNLPHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSARTIQVDMV-SDFEKEAYHVSQMILEGQRVSHTPQLTLSGVKIIEDLYRSWGK----EG---
10	SPARKS	3rbva	0.228	0.924	3.673	threading_10	PIRVGVIGCADIAWRALPALEAEPLTEVTAIASRRWDRAKRFTERFGG-EPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDE-GVIGEIRSFAASFTIP----------------PKGGALLDIGVYPIRAAGLFLGDLEFVGAVLRHEDRDVVVGGNALLTTRQGTAQLTFGMEHAYTNNYEFRGSTGRLWMNRVFTPPAVVHIERQDHAEQFVLPA-HDQFAKSIRAFAQAVLSGEHPREWSEDSLRQASLVDAVRTGARDIFP------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.851 to 1ydwB SCOP code=c.2.1.3	TM-score=0.844 to 1ydwB SCOP code=c.2.1.3	TM-score=0.840 to 1ydwB SCOP code=c.2.1.3	TM-score=0.836 to 1tltB SCOP code=c.2.1.3	TM-score=0.839 to 1ydwB SCOP code=c.2.1.3