Template-based Modeling Results for YHDY_ECOLI

Submitted Primary Sequence

>Length 367
MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTGRTPH
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTGRTPH
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTGRTPH
5542222223220133212000100410111101000100000000110010010000102111111200241000000004201100001013221000000000000000000032122201100000000000000110000000120012101000000000000000000000000002203120020001000100210110000000000001011310201300000000000000000100200031014001100210211112010000001002200100022001101100000000011001002201121221011010000000000000000120020014213224335
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTGRTPH
1	MUSTER	3dhwA	0.163	0.534	1.538	threading_1	-------------------------------------------------------------------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI---VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI---GYNATVMNTVLVLLVILVYLIQFAGD--------------
2	PROSPECT2	1ejlI	0.142	0.959	1.824	threading_2	GTVNWREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAIPAFISWALGNIAGDGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-----HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNQDQIQQVVNHGLGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQVYKASLNLIEKY-----FS
3	PROSPECT2	1ee4a	0.079	0.899	1.733	threading_3	QE------------------LPQMTQQLNSDDMQEQLSATVKFRQIL------------SREHRPPIDVVIQAGVVPRLVE-----FMRENQPEMLQLEAAWALTNIAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGPSLIRTATWTLSNLCWSVVSQALPTLAKLIYSETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELSHESTLVQTPALRAVGNIVTGNDLQTQVVIN--AGVLPALRLLLSSPKENIKKEACWEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCEVTLDALENILKMGEADKEARGLNI
4	HHPRED-l	3rlf_F	0.139	0.826	3.778	threading_4	---------------WQSDALKWSVLGAQGEYLFAITTLILSSAGLYINRKAYAWAFTNYTNQLTFERAQEQAGKTYNFALSDGEKNYLGFY----NWGDEK-------------LSPGYT--V----TTGWKNFTR-V-F-TD----EGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQEALRG-KAVYRVLLILPYAVPSFISILIFKGLFNMMLSFGVKPDPRTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNPDLLVTYRIAFEGG--GGQDFGLAAAIATLIFLLVGALAI----------------
5	SPARKS	3dhwa	0.158	0.534	6.125	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI---VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI---GYNA-TVMNTVLVLLVILVYLIQFAGD-------------
6	PROSPECT2	3a6pA1	0.070	0.973	1.722	threading_6	AMDQVNADPNSTQRYEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFVMELIANGTLILEEENHIKDALSRIVVEMIKREWP---QHWPSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQESKAQANCRVGVAALNTLAGLEILCLLLNEQELQLGAAECLLIAVSRKVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETSFLAFTTHPSQFLRSSTQMDPLLLAIIPKYLRASMTNLSKTDSPSCEYSRFDFDSDEDFNAF-------FNSSRAQQGEVMRLACRLKTSFQMAGEWLKYQLSTF
7	PROSPECT2	3dhwA	0.168	0.534	2.490	threading_7	M-------------------------------------------------------------------------------------------------------------------------------------------------------WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI---VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIG---YNATVMNTVLVLLVILVYLIQFA--------------GD
8	SAM-T99	2q2aA	0.082	0.431	1.103	threading_8	ITDERKQSYDFSDPYFEATQVILVKQGSALDLKGKTIGVQNATTGQEAAEKLFGGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSG---KYTEIYK-----------------KWFGKEPKLDRLKQ
9	PPA-I	3dhwA	0.163	0.534	3.974	threading_9	-------------------------------------------------------------------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIG---LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI---GYNATVMNTVLVLLVILVYLIQFAGD--------------
10	HHPRED-l	3tui_A	0.172	0.569	4.194	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLRIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV--GTS-IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI---G-YNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR-----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.730 to 3dhwA SCOP code=f.58.1.1	TM-score=0.826 to 1ialA SCOP code=a.118.1.1	TM-score=0.738 to 3dhwA SCOP code=f.58.1.1	TM-score=0.727 to 1ialA SCOP code=a.118.1.1	TM-score=0.639 to 2onkC SCOP code=f.58.1.1