Template-based Modeling Results for YIAJ_ECOLI

Submitted Primary Sequence

>Length 282
MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEEEECCCCCCEEEECCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEEECCCCCEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
543322234323223334432113001200200200132242020110043021220001200200231010121322110100010010012012213012001200220032122000000123220000020222212010103102101000000010000103231022003222230331042212213101310220142000012331221000000000124120000000000123033200430030022002100420112243322235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
1	MUSTER	1mkmB	0.287	0.876	3.239	threading_1	---------------------HMNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKD-KRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEG-EQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIV--ELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY----------
2	SPARKS	3mq0a	0.243	0.862	5.378	threading_2	----------------SQISDTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLP--SAHGLLAVMTELDLLARSAD-GTLRIGPHSLRWANGFLSHLDIVSTFNDHLAQRHDLDPYTVTLTVREGGEVVYIGCRNHT-------FRIGMRLPAPFTATGKILLSDLGPGELRMLF---SQFPQPLTSRSVAGLSQLEEELALTRARGYSIDDGQIREGMLCIGAAIRDYSGAASAGIAISLIRSEASDEKIAYLGEELRTTANALSEKLGY----------
3	PROSPECT2	3mq0A	0.243	0.862	4.391	threading_3	----------------SQISDTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLP--SAHGLLAVMTELDLLARSA-DGTLRIGPHSLRWANGFLSHLDIVSTFNDHLAQRHDLDPYTVTLTVREGGEVVYIGCRNHT-------FRIGMRLPAPFTATGKILLSDLGPGELRMLF---SQFPQPLTSRSVAGLSQLEEELALTRARGYSIDDGQIREGMLCIGAAIRDYSGAASAGIAISLIRSEASDEKIAYLGEELRTTANALSEKLGY----------
4	PPA-I	1mkmB	0.287	0.876	5.551	threading_4	---------------------HMNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKD-KRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEG-EQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIV--ELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY----------
5	HHPRED-l	2g7u_A	0.272	0.872	3.948	threading_5	----------------D--RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS--GGRWSLTPRVLSIGQHYSESHALIEAA-PRLLEVAEKTQESASLGVLDGADVVYAARVPVR-RI-SINVSVGTRVPAYATS-GRALLAWAPADVVERVVAES--TFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFEQAVPCVLAAAAALSAD-GFA---------
6	HHPRED-g	2g7u_A	0.272	0.872	3.714	threading_6	------------------DRDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS--GGRWSLTPRVLSIGQHYSESHALIEAA-PRLLEVAEKTQESASLGVLDGADVVYAARVPVR-RI-SINVSVGTRVPAYATS-GRALLAWAPADVVERVVAE--STFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFEQAVPCVLAAAAALSAD-GFA---------
7	SP3	3mq0a	0.243	0.862	5.618	threading_7	----------------SQISDTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLP--SAHGLLAVMTELDLLARSAD-GTLRIGPHSLRWANGFLSHLDIVSTFNDHLAQRHDLDPYTVTLTVREGGEVVYIGCRNHT-------FRIGMRLPAPFTATGKILLSDLGPGELRMLF---SQFPQPLTSRSVAGLSQLEEELALTRARGYSIDDGQIREGMLCIGAAIRDYSGAASAGIAISLIRSEASDEKIAYLGEELRTTANALSEKLGY----------
8	SAM-T99	1mkmB	0.287	0.876	4.952	threading_8	---------------------HMNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-KDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQ-SIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLK--IVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY----------
9	MUSTER	3mq0A	0.243	0.862	3.052	threading_9	----------------SQISDTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLP--SAHGLLAVMTELDLLARSAD-GTLRIGPHSLRWANGFLSHLDIVSTFNDHLAQRHDLDPYTVTLTVREGGEVVYIGCRNHT-------FRIGMRLPAPFTATGKILLSDLGPGELRMLFS---QFPQPLTSRSVAGLSQLEEELALTRARGYSIDDGQIREGMLCIGAAIRDYSGAASAGIAISLIRSEASDEKIAYLGEELRTTANALSEKLGY----------
10	SPARKS	3r4ka	0.237	0.883	5.211	threading_10	-----------------------GTVSKALTLLTYFNHGRLEIGLSDLTRLSG-NKATVYR-LSELQEAGFVEQVEGARSYRLGPQVLRLAALREASVPILSASRRVLRELSEDTGETTHLSLLQGEQLASLSHAYSSRNA--TKVEDAEVLTFHGTASGLAVLAYSEPSFVDAVLA---APLTARTPQTQTDPAAIRAEIAEVRRTGLAQSIGGFEAEVHSHAVPIFGPDRAVLGALAVAAPTSR-TPDQKRTIPPALRAAGLSLTERIGGACPPEFPT--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.887 to 1mkmB TM-score=0.882 to native SCOP code=a.4.5.33	TM-score=0.815 to 1mkmB TM-score=0.878 to native SCOP code=a.4.5.33	TM-score=0.715 to 1mkmB TM-score=0.838 to native SCOP code=a.4.5.33	TM-score=0.711 to 1mkmB TM-score=0.839 to native SCOP code=a.4.5.33	TM-score=0.887 to 1mkmB TM-score=0.882 to native SCOP code=a.4.5.33

Experimental Structure

Download 1ysqA

SCOP code=a.4.5.33