Template-based Modeling Results for YIBD_ECOLI


  Submitted Primary Sequence

>Length 344
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCEEEEECCCEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
55432110000000110030031002000422131010000010022201200310143042010012221100101120012011100000101110231001100200242311000000010023333212212233232212121210010011123111000000011200231203022111011010001001202201002210000011331004233311210211210120020023013101210100120111001100200210333332221130002001100022002102001000000000010121121121112102111324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDGSTDNSVEIAKYYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQCNADWCFRETGETWQSIPTDRLRSTGVLTGPDWLRMGLSSRRWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLHNTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKIMIYPEFHQQITYEALRVCHAVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHHRITRSAFNLR
1MUSTER3bcvA0.2950.5521.860threading_1LI---PKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDY---TYNVAQKYTCDAVFTF--KLYKNKNEIHTLLKDLIASD----------PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSELPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
2SPARKS3bcva0.2840.5523.247threading_2---LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDYTYNVAQKY---TCDAVFTFKLYKNKNEIHTLLKDLIASD------------PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERISEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
3PROSPECT21xhbA10.1420.8172.897threading_3YPDNLPTTSVVIVFHNEWSTLLRTVHSVINRSPRHEEIVLVDDASERDFLPLESYVKKLKVPVHVIREQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDNWKLNFRWYPVPQREMDRRKGDRTLPMAGGLFSIDRDYFQEIGTYDAGMDIGENLEISFRIWQCGGTLEIVTCSHVGHVFG---------------------------------------------------------------QIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPRH
4PPA-I3bcvA0.2890.5522.917threading_4---LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDY---TYNVAQKYTCDAVFTFKLYKNKNEIHTLLKDLIASD------------PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERISEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
5HHPRED-l1xhb_A0.1450.8843.902threading_5YPDNLPTTSVVIVFHNEASTLLRTVHSVINRSPRHMEIVLVDDASERDFLRPLESYVKKLKPVHVIREQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYFNWRWYPVPQREMDRRKGVRTPTMAGGLFSIDRDYFQEIGTYDAGMDGGENLEISFRIWQCGGTLEIVTCSHVGHVF--------------GQIINK---NNRRLAEVWMDEFKNFFYIIS-----------PGV-TKVDYGDISSRLG-LRRKLQCKPFSWYLENIYPD-SQIPRH---YFSLGEI---RNV--ETNQCLDN-
6HHPRED-l3bcv_A0.3090.5173.944threading_6---LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSD-----YNVAQKYTCDAVFT----------------------FKLYKNKNEIHTLLKDLRAIQVSAKVVLYRRNLIEKKHLRFVSELPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
7SP32z86a0.1440.9882.500threading_7LI--IDGLSIVIPTYNRAKILAITLACLCNQTIYDYEVIVADDGSKENIEEIVREFE-SLLNIKYVRQKDYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPESVDWRIEHFKNTDNLRLSGGNVAFAKKWLFRAGW-FDEEFTHEDNEFGYRLYREGCYFRSVEGAMAYHQEPPQLLQQKVPYFYRKKEKIESATLIVRCVESATLRILQEHYIGSASNTAVRLAVELCLDEFRKDLSLYNWPIYSREKLTSAFTARAWNLTEGFNSNAVDYDMYLKLSELDIQKENHFKVVNESLSRL
8SP33bcva0.2890.5523.143threading_8LI---PKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDYTYNVAQKY---TCDAVFTFKLYKNKNEIHTL---------LKDLIASDPYAREERA---IQVSAKVVLYRRNLIEKKHLRFVSELPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
9SAM-T993bcvA0.2840.5526.925threading_9L---IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-ACNSGLDVATGEYVAFCDSDDYVDSDY---TYNVAQKYTCDAVFT--FKLYKN-----KNEIHTLLKDLIASDPYAREERAIQ-----VSAKVVLYRRNLIEKKHLRFVSERPSEDLIFNVDVLANSNIVCVLP---------------------------------------------------------------------------------------------------------------------------------------
10SPARKS2d7ia0.1350.9042.501threading_10YLETLPNTSIIIPFHNEWSSLLRTVHSVLNRSPPEAEIVLVDDFSDREHLKPLEDYMALFPSVRILRKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMFDWEMYYKRIPIPPELQKADPSDPFESPVAVDRKWFWELG-GYDPGLEGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS-------LARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWG-------------------------EIRNVG

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.546 to 1h7qA
SCOP code=c.68.1.1
TM-score=0.544 to 1h7qA
SCOP code=c.68.1.1
TM-score=0.552 to 1h7qA
SCOP code=c.68.1.1
TM-score=0.760 to 1xhbA
SCOP code=b.42.2.1
TM-score=0.539 to 1h7qA
SCOP code=c.68.1.1