Template-based Modeling Results for YKFA_ECOLI


  Submitted Primary Sequence

>Length 287
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
55433113201310330032003202321342232301000002121010000010041310101312102321020202133120000101112321220220011013102401000000203241222022002200122342210000000121332222222211122101310110131023112000001323210310031013003322222112201210111101220433113000000110241221321021002101200110021002111
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
1MUSTER3ievA0.2100.8471.616threading_1--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAKN-----------VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMMLVPTSIAVKINEIKDANPNMLVIKGEIIVDRKEIGKRARQELELIL
2SPARKS3r9wa0.2220.8013.460threading_2--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMEEVPTSIAVKINEIKPGDANPLVIKGEIIVDREN-------------
3PROSPECT21wf3A0.1910.8402.432threading_3EK-------------------------------TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY---------------PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFAKSDQTFGEWVAEILREEAMKRLWHAVATKVEEVAERENERPSQKAIVGRKIKEIGQATRKQLEALL
4PPA-I3ievA10.2350.6242.244threading_4--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK-PLNKPVIVVINKIDKIGPAKNV-----------LPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEFPEDMIT----------------------------------------------------------------
5HHPRED-l2hjg_A0.1670.8151.629threading_5GTHGLGLGDLLDAVA-----------EHFKNYNEEVIQFCLIGRPNVGKSSLVNA-LGEERVIVS---------VDTSFTYNQQEFVIVDTAG-RKKGKTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDEST-KEF---EEN-----IRDHFQFLDYAPILF-SALTKKRIHTL-PAIIKASENHSLRVQTNVLNDVI-------DAVA-NPPTHGSYATQVSVKPL-HFSYERFLNRIRDAF--------GFE-
6HHPRED-g2hjg_A0.1580.9062.685threading_6GEPYPISGTHGLGLGDLLDAVAEHFKNIPEKYNEEVIQFCLIGRPNVGKSSLVNA-LGEERVIVS---------VDTSFTYNQQEFVIVDTAG-RKKGKETTEKYSVLRKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH--EAGKAVVIVVNKWDAVDKDEST-KEFEE--------NIRDHFQFLDYAPILF-SALTKKRIHTL-PAIIKASENHSLRVQTNVLNDVI-DAVA-NPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPYERF-LENRIRDAFGFEG
7SP33r9wa0.2120.8223.418threading_7--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMEEVPTSIAVKINEIKPGDPNMLVIKGEIIVDREN-------LKPIII
8SAM-T991xzpA0.1650.9273.193threading_8-VELDYPDEIETNTGEVVTRLERIKEKLTGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSENDVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVE------------KINEEEIKNKL----GTDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK
9MUSTER1wf3A0.2070.8401.584threading_9-------------------------------EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY--------------PEEAMKAYHELL-PEAEPRMLSALDERQVAELKADLLALMPEGPFYAKSDQTFGEWVAEILREEAMKEVPYAVATKVEEVAERENGVLYIKAILYVERKEIGQATRKQLEALL
10SPARKS3ieva0.2160.8223.171threading_10--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMMEVPTSIAVKINEIKPGDANPLVIKGEIIVDRENLKPIII-------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.748 to 1wf3A
SCOP code=c.37.1.8
TM-score=0.816 to 1wf3A
SCOP code=c.37.1.8
TM-score=0.724 to 1wf3A
SCOP code=c.37.1.8
TM-score=0.804 to 1wf3A
SCOP code=c.37.1.8
TM-score=0.710 to 1wf3A
SCOP code=c.37.1.8