Template-based Modeling Results for YLIF_ECOLI

Submitted Primary Sequence

>Length 442
MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCEEECCCCEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEECCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ
5542322111001000000000001002210332013012100110000110120121001200320332232001001211132212110010010001331002022234310110010021310200000103141000000001222100000112101100210212131000000221321112211010000000100100000000000111221000200000000000000000000010022011200021211012102200100011001113112101111111301201011001210311143100000000210320101000100010012003003320223201001011110000011022310110031013132220100000000102323203200100030012023323211022
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVIDTAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ
1	MUSTER	2v0nA	0.218	0.882	1.426	threading_1	SARI----LVV--------IEANVRLLEAKLTAEYYEVST--AMDGPTALAMAARDLPDII-LLD-VMMDGFTVCRKLKDDPTTRHIP---------------VVLITALDG--RGDRIQGLES-----SDFLT-----------PIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVRVAAELGVIESDPEKAKISAGGPNAAAKNFDGLRFTAALRSAMVDPDDRGRMVKALEIGILSR--IDPQELSARVKTQIQRKRYTDYLRNNLDHSAVTDQLTGLHNRRYMTGQLDSLVKDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR-AIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHGREMLNVTISIGVSATAGGDTPEALLKRADEGVYQAKASGRNAVVGK
2	SPARKS	3qyya	0.272	0.333	3.580	threading_2	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HALFDPLTEALNRRGCEQAMRDSVTWPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLG-AQDWIGRWGGDEFLIGVHASEDEATLKLNQWLSMLEREA-PLHVSAGSAVCEVGIDATELYRRADAAMYRAKFSGGRRLVRD
3	PROSPECT2	1w25A	0.182	0.860	3.092	threading_3	EANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDCRKLKDGDRIQGLESKPIDDVMLFARVRSLTRF----KLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAEL-------------------------GVEHRPVIESDPEKAKISAG-----GPVDLVIVNAAAKNFD--------GLRFTAALRSEERTRQLPVLAMVDPDDR--GRMVKALEIGVNDILSRPIDPQELSARV-----------------KTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR-AIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHGREMLNVTISIGVSATGEGDTPEALLKRADEGVYQAKASGRNAVVGH
4	PPA-I	3breB	0.205	0.652	1.922	threading_4	------------------------------------------------------------------------------------------------------------------------------------------------APLDGAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSD----------PQQAVAVANQIVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTPRPGSHLTVSIGVSTLGGGQTFRVLIEMADQALYQAKNNGRNQVGLM
5	HHPRED-l	1w25_A	0.209	0.844	5.867	threading_5	SAR----ILV------VDDIEANVRLLEAKLT-----------AEYYEVS----------------TAMDGPTALAMAARD-------------LPDIILLDVM----MPGMD-GFTVCRKLKDDPTRHIPVVLITALDASDFLKPIDDVM--LFA----RVRLTRFKLVIDELRSGRRMGVIAGAAA-RLDGLGGRVLIVDDNERISAGGPVDLVIVNAAAKNFDGL-RFT--AALRSEERTRQLPVLAMVDPDDRGR--MVKALEIGVNDILSRTQIQRKRYTDYLDHSLELAVTDQLTGLHNRRYMTGQLDSLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR-AIDLPCRYGGEEFVVIMPDTALADALRIAERIRMFGREMLNVTISIGVSAAGEGDTPEALLKRADEGVYQAKASGRNAVVG-
6	HHPRED-g	1w25_A	0.188	0.891	5.597	threading_6	DIEANVRLLEAKLEYYEVSTAMDGPTALAMAAR--DLP------D-IILLD------------VMMPGMDGFTVCRKLKD--DP-----TTRHI-P-VVLITA---LDGRGDRIQGLESGASDFLTKPMLFARVSGRRMGGAAARLDGLGGRVLIVDDNERQAQ--RVAAELGVEHRPVIESDPEK-AKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVL----------AMV-DPDDRGRMVKALEIGVNDILSRPIDPQELSARVKKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR-AIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSLNVTISIGVSATAGGDTPEALLKRADEGVYQAKASGRNAVVGK
7	SP3	3qyya	0.272	0.333	3.731	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HALFDPLTEALNRRGCEQAMRDSVTAPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLG-AQDWIGRWGGDEFLIGVHASEDEATLKLNQWLSMLERE-APLHVSAGSAVCEVGIDATELYRRADAAMYRAKFSGGRRLVRD
8	SAM-T99	3breB	0.203	0.667	4.727	threading_8	------------------------------------------------------------------------------------------------------------------------------------------------APLDGAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLARGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVEPGSHLTVSIGVSTLVPGGTFRVLIEMADQALYQAKNNGRNQV---
9	MUSTER	3breB	0.233	0.679	1.343	threading_9	-APLDG---AVMVLL-V--QAMIGEAVRRSLASE-IDFH-FCSDPQQAVAVANQIK----PTVI--------------------------LQDL--VMPGVD-------LT--LLAAYRGNPATRDI------------------------PIIVLSTKEEPTVKSAAFAA-----------------ANDYLVKL---------------------------------------------------PDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTPRPGSHLTVSIGVSTLGGGQTFRVLIEMADQALYQAKNNGRNQVGLM
10	SPARKS	3i5aa	0.224	0.676	3.548	threading_10	------------------------------------SAMVLLVDQAMIGEAVRRGAGHESIDFHFCADP--HQAIAQAVQIKPTVI----LQDL--------------VMPGLDGLTLVREYRSN--------------------PLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLV------KLPDNI-------------------------------------------------------------ELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSPVPGSSLTVSIGVATVQVGQHSRQLILDADKGLYLAKNNGRNQVAAG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.679 to 2v0nA SCOP code=c.23.1.1	TM-score=0.863 to 2v0nA SCOP code=c.23.1.1	TM-score=0.540 to 2v0nA SCOP code=c.23.1.1	TM-score=0.609 to 2v0nA SCOP code=c.23.1.1	TM-score=0.567 to 2v0nA SCOP code=c.23.1.1