[TACOS server]

TACOS results for job id TACOS289A-TACOS289B

[Click on TACOS289A-TACOS289B_results.tar.bz2 to download the tarball file including all modeling results listed on this page]

  Submitted Sequence in FASTA format

>Sequence A
MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV
HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY
DPKAIIGKETGKVLEIGDYVRARIVAISLKASKIALTMRQPYLGKLEWIEEEKAKKQ
>Sequence B
MIGKKILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKLDKEEAKKLVEELI
SLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRKYI

  Top 10 threading templates by TACOS for sequence A


Rank  PDB
Hit
  Iden  Cov Norm.
Z-score
Download
Align.
Seq
Sec.Str
Sol.Ac
                  20                  40                  60                  80                 100                 120                 140                 160
                   |                   |                   |                   |                   |                   |                   |                   |
MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKAIIGKETGKVLEIGDYVRARIVAISLKASKIALTMRQPYLGKLEWIEEEKAKKQ
CCSSSSSCSCSSCCHHHHCCHHHHHHHHHHHHHHCCCSCCCCCSSSSSSSSSSCCCSSSSCCCCCCSSSSSHHHHHCCCCCCCSSSSSSSSSSCCSSSSSSCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCSSSCCCCSSSSSSSSSSCCCCSSSSSSSCCCCCCHHHHHHHHHHCC
634334154215131651465146203630475157412762211001130563565424556565334241541335354533150304523631010314534100112514753152457423475474315473503030261448654030204654443264266646789
1 7k36B  0.081  0.910 3.230Download VEPIYTFAHIGPVLSLAISSN--------------GEQGIDA--TIQWWNMPSPSVDPYDTYEPNLAGTLVVWGLAYSGIKNQLLSCSVRLWNCDPAHMVTSFNTGSAVIYDLLSNHINRTLPVTITAHEDRHIKMIHSMVVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEI
2 6w1sT  0.137  0.949 2.431Download VADVVFVIEGTANLGPYFE-ELRKHYLLPAIEYFNGGPPDYGGTQYSLVVFNTVDPESYVQCHAPTSSAYEFVTWLDGIKFSLIAEGLSTALQLFDDFKKMREQQTHRVCLLICNSPPYLLPAVESTTYSGCTTES--------LVQKIGERGIHFSIVSPRKLPALRLLFEKAAPP
3 7ad6A2  0.082  0.893 3.010Download --------KPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQGVGISNTGICVADTVKAKVFKDVFLEMNIVVRGEQIQLKGTVYNYRTSGM---------QFCVKMSAVEGICTSESP-SSKCVRQKVEGSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPE-
4 7lbgD  0.087  0.780 2.228Download ----------------------------TVLSGCASRGTTGLPQEVHVLNLRTRETLHLNPISSVHIHHKSVVFLLNSPHP--VWHLKTERLAGVSRLFLVSEGSVVQFSSANFSLTAETEERNFP-HGNEHLLEYGAVTSFTELKI---ARNIYIKVGEDQVFPPK-----NIGKN
5 7k36B2  0.092  0.616 2.990Download ----------------------------IPTSVDFIGCDPAHMVTSVIYDLET--------SQSLVILSNHINRVVSHPT-LPVTITAHE--------------DRHIKFFDN-----KTGKMIHSMVAHLDAV---TSLAVYLMSGSHDCSIRLWNLDSKTCVQEIT---------
6 7kgdA2  0.118  0.910 2.070Download MLVGINSPN--QYSEVDLSDYLVRNVVEELKR--EG-----------VGKVQSFGFAILENGKPATAAAIQLSAVKTAEGVRAKIEELKLNLPE-GMEFSIPYDQGWFMTSFQLPSDATAERTRNVVNQFENNLKDNPDVKSAILGWGFSGAVAFTTLKKERTSSASKMTSDVNSSN
7 6ltcA  0.105  0.915 2.920Download GATVVVPPPFRRAEPDVWAELVRDVLLELLVGEAESRPLATLRLAVVPGRARAQAPGPIDAVDPQWTSIPYGKPI---------ANQRYYIVDRDLRPRPTWARGEMAVASLGLALGYLNDPERTLPGTGERAYLTGDFGRLL------PDGGIEILGREDFQGQRIELGEIGVRAA
8 6w11B  0.090  0.938 2.002Download MYFVTQKEDSLVI-PSPIVSGTRAAIESLRAQISRLNYPPPRIYEIEITDLSKILD-IILTLPEPIISDLT-RMINTLILLGIIVRFTVYVRDEGSRVISFNDNTIRALMRDYSREEMKL---NVLYETKGTELMLDKSEINKIAEL----KKFGI-LTQRKVELNELGLNVIKLNK
9 7ad6A  0.114  0.989 2.670Download KWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLV--KQLRLSMDIDVSYVEVLLNDDLIVSTGFGSGLATVHVTTVVHKEVCSFYLKIDTQDIEADVACASYKPSSSHAVMDISLPTGISANEEDGVDQLFTDYQIKDGHVILQLNSIPSSDFCVRFRIFELFLSPATFTVYEYHRPD
10 7czpA1  0.072  0.859 1.900Download AWNRKRISNCVA----DYSVLYNSASFSTFPTKLNDLCF--TNVYADSFVIRGDEVRQIAPGQTGKIADYNYK--LPDDFTGCVIAWNSNNLDSK-YLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP----LQSYGFQPTNGVVVLSFEATVCGP------------
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates.
(c)Ident is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(e)Cov represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score > 1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)Sec.Str is predicted secondary structure.  H:Helix; S:Strand; C:Coil
(i)Sol.Ac is predicted solvent accessibility.Values range from 0 (buried residue) to 9 (highly exposed residue)
(j)The top 10 alignments reported above are from the following threading programs:
      1: MUSTER   2: FFAS03   3: SPARKS-X   4: SAM   5: Neff-PPAS   6: SP3   7: wdPPAS   8: PROSPECT2   

  Top 10 threading templates by TACOS for sequence B


Rank  PDB
Hit
  Iden  Cov Norm.
Z-score
Download
Align.
Seq
Sec.Str
Sol.Ac
                  20                  40                  60                  80                 100
                   |                   |                   |                   |                   |
MIGKKILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRKYI
CCCCCSCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC
86455347765153540461057258766255325202510541472538505611640483816561003002123745730320125563565275026116738
1 7k36A1  0.067  0.832 3.270Download ---------------YPIAVLIDELRNEDVQLRLNSIKTIALALGV--ERTRSELLPFLTDTYDEDEVLLALAEQLGTYVHCLLPPLESLATVEE-TVVRDKAVESL
2 7ld0A  0.147  0.953 2.200Download ALHGGQAVQRRMVEKRAAEWLFPLAFSKEDELLRLHACLAVAVLATNK-----EVEREVERSGTLALVEPLVASLDPGGPDDLQRLVPLLDSNRLEAQCIGAFYLCA
3 7lcyA1  0.172  0.813 2.720Download --AGSGQQEIEQTINKYSNMLTSIVSSLQYLEK---INEVIRRAWAVPHELGYSLCNSLRQSGG---------------LDLLMKNCVKPDLQFSSAQLLEQCRKHV
4 7lwzB  0.099  0.944 1.788Download ------IVLGMVTRAQWQEAAAAQLAECGDPWFEEHIAELSEMLFSGKHYVRKDAIGGIVNAPFHNELLAFNAYIEPNALEVLKHFVSQYQIPQFEYKGQQLIMDLF
5 6w1sR1  0.065  1.000 2.690Download SIFEEVVKTEIIKLISCLAAFRQFWSGLSQESHEQCVQWIVKFIHGQHPKRISFLYDCLAMAVLPRMVCESLISLEWERTQLWALTFKLVRGGVDVRDLLKAILEKI
6 6w1sQ  0.095  0.981 1.742Download TLLQSYLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE-VRAANIVRAGESLMKL-VSDLKQFLILNDFPSVNEAIDQRNQQLRALQECDRKLITLRDEV
7 7k36A  0.088  0.953 2.560Download EQLGTFT--TLVGGHCLLPPLESLAT-VEETVVRDKAVESLRAISPS--DLEAHFVPLVKRLADWFTSRTSACGLFSAVKAELRQYFRNLCSDDTRRAAASKLGEFA
8 7lcyA  0.071  0.916 1.720Download --AGSGQQEIEQTINKYSNMLTSIVSSLQYLEKINEVIRRAWAVPTHGHELGYSLCNSLRQSGCVQFSSAQLLEQC--LTTENRKHVVDN-----LDKVVNVACVCT
9 7k36A4  0.084  0.888 2.500Download -----------GKEWAHATIIPKVLAMSGDYLHRMTTLFCINVLSEGQDITTKHMLPTVLRMAGDPFNVAKSLQKIGPIQSEVKPILEKLTQDQD-VDVKYFAQEAL
10 7lftA  0.149  0.944 1.655Download LIGVLIF---ATIVGNIGSMISNMNAA---RAEFQARIDAIKQYMHVSKDMEKRVIKWFDYLKKTVDEKEVLKYLPDKAINVHLDTLKKVRADCEAGLLVELVLKLQ
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates.
(c)Ident is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(e)Cov represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score > 1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)Sec.Str is predicted secondary structure.  H:Helix; S:Strand; C:Coil
(i)Sol.Ac is predicted solvent accessibility.Values range from 0 (buried residue) to 9 (highly exposed residue)
(j)The top 10 alignments reported above are from the following threading programs:
      1: MUSTER   2: FFAS03   3: SPARKS-X   4: SAM   5: Neff-PPAS   6: SP3   7: wdPPAS   8: PROSPECT2   

  Top 10 complex threading templates by TACOS


Rank  PDB
Hit
  Iden  Cov Norm.
Z-score
Download
Align.
Seq
Sec.Str
Sol.Ac
                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |
MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKAIIGKETGKVLEIGDYVRARIVAISLKASKIALTMRQPYLGKLEWIEEEKAKKQmigkkilgeryvtvseaaeimynraqigelsyeqgcaldylqkfakldkeeakklveelislgidektavkiadilpedlddlraiyykrelpenaeeileivrkyi
CCSSSSSCSCSSCCHHHHCCHHHHHHHHHHHHHHCCCSCCCCCSSSSSSSSSSCCCSSSSCCCCCCSSSSSHHHHHCCCCCCCSSSSSSSSSSCCSSSSSSCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCSSSCCCCSSSSSSSSSSCCCCSSSSSSSCCCCCCHHHHHHHHHHCCCCCCCSCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC
63433415421513165146514620363047515741276221100113056356542455656533424154133535453315030452363101031453410011251475315245742347547431547350303026144865403020465444326426664678986455347765153540461057258766255325202510541472538505611640483816561003002123745730320125563565275026116738
1 1go3  1.000  0.996 7.135Download MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKAIIGKETGKVLEIGDYVRARIVAISLKASKIALTMRQPYLGKLEWIEEEKAKKQmigkkilgeryvtvseaaeimynraqigelsyeqgcaldylqkfakldkeeakklveelislgidektavkiadilpedlddlraiyykr-elpeaeeileivrkyi
2 1go3  1.000  0.996 4.459Download MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKAIIGKETGKVLEIGDYVRARIVAISLKASKIALTMRQPYLGKLEWIEEEKAKKQmigkkilgeryvtvseaaeimynraqigelsyeqgcaldylqkfakldkeeakklveelislgidektavkiadilpedlddlraiyykr-elpeaeeileivrkyi
3 4qiw  0.490  0.989 5.247Download MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDENQFIGKETNRVLKLGDYVRARIIGVSVKRNKINMTMRQPGLGKFEWIEKEK-K--migrkkleehyitiaeakellerrhaeepmfyearvslehaerfaklkpeqarelkeklmglfineriaaklvdilpedyldirvifakeeymptpeeiikvideyr
4 4qiw  0.498  0.989 4.778Download MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDENQFIGKETNRVLKLGDYVRARIIGVSVKRNKINMTMRQPGLGKFEWIEKEK-K--migrkkleehyitiaeakellerrhaeepmfyearvslehaerfaklkpeqarelkeklmglfineriaaklvdilpedyldirvifakeeymptpeeiikvideyr
5 2y0s  0.360  0.877 4.811Download MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDTLKYDNVIFGEK-SK-KVIQKGDKVRARVISVAS--PRIALTMRQPYLG---------------svyiveehyipysvakkllsdviksgsssnllqrtydylnsvekcdaesaqkvveelssiisredvravlasicpitpdevrsi-limds---------------
6 1wcm  0.222  0.951 4.087Download MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLYNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNASNSYQS--SEDVITIKSRIRVKIEGCISQVIHAIGSIKEDYLGAI-----------ststfinelialnlsearlvikelilqttgnkdlkntmqyltnfsrfrqetvgaviqllkstglhpfevaqlgslacdtadeaktlip-slnnisddelerilkele
7 3h0g  0.220  0.912 4.038Download -FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTPPNYSG-EDQVIEKGSNVRLKIVGTRTDTIFAIATMKEDYLGVL------------------nedmltvseakilietvlaeipmtdvmkktvayfnvfarfatyacerilg--nr--fhkferaqlgtlccedaeeartlip-slaniddqnlqgildels
8 2pmz  0.359  0.926 3.631Download MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVIIFGEKSKKVIQKGDKVRARVISVASTVPRIALTMRQPYLGKLEWITQTK--K-mssvyiveehyipysvakklltdvirsggssnllqrtydylnsvekcdaesaqkvieelsnivsredvrailasicpttsdevrsil-vm-----------------
9 2c35  0.210  0.930 4.016Download MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNNCYKTMDEDIVIQQDDEIRLKIVGTRVDKIFAIGSLMDDYLGLV------------------taetllnsevhmllehrkqeqelsevfmktlnytarfsrfkretiasvrslllqkklhkfelaclanlcpetaeeskalip-s-legedeeilddiqtkr
10 3ayh  0.233  0.958 3.691Download MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDIFIPKDMLFDPCVFRDERAWVWKIEELYFDIDEEIRFQIESEDFVDSTLIASCSRDGLGIPAWWK--------mkvlerdaylt-naevffhlkemeqavclrtiqfeilkylssnceltkerfldciaifnefeltkaeilvilnnkpssvpelyaci--e-giekeedlvekinttf
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by TACOS.
(c)Ident is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Cov represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(e)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score > 2.5 mean a good alignment and vice versa.
(f)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(g)The top 10 alignments are from the complex threading programs SPRING and COTH:
(h)Sec.Str is predicted secondary structure.H:Helix; S:Strand; C:Coil
(i)Sol.Ac is predicted solvent accessibility.Values range from 0 (buried residue) to 9 (highly exposed residue)

  Top 5 final models predicted by TACOS

(By right-clicking on the images, you can change the configurations, e.g. modifying the background color or stopping the spin of your models)
  • Download model1.pdb
  • C-socre = 1.53
  • Estimated TM-score = 0.93±0.06
  • Estimated RMSD = 3.0±2.2Å
  • Download model2.pdb
  • C-socre = -1.27


  • Download model3.pdb
  • C-socre = -1.45


  • Download model4.pdb
  • C-socre = -1.80


  • Download model5.pdb
  • C-socre = -1.85




  • [Click on TACOS289A-TACOS289B_results.tar.bz2 to download the tarball file including all modeling results listed on this page]


    Please cite the following articles when you use the TACOS server:
    1.Zi Liu, Brandon Govindarajoo, Srayanta Mukherjee, Chengxin Zhang, Aysam Guerler, Jeffrey Brender, Zhiping Weng, Dong-Jun Yu, Yang Zhang. Full-length Protein Complex Structure Prediction by Template-based Multiple Chain Fragment Reassembly. submitted, 2020.