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Can standalone package of Threpp predict specific PPI structure?

Wed, 04/14/2021 - 02:27 — louis_Lu

Greetings,

I would like to run Threpp offline to predict structures of a large number of PPI, but the package.zip downloaded from Threpp page seem to be used to recognize PPI rather than predict the structure.

If it is possible for the offline package of Threpp to enter two sequences and return pdb format models, like Threpp online server does?
The service URL: https://zhanglab.ccmb.med.umich.edu/Threpp/

Thanks very much.

‹ Output structure of SPRING only contains C-alpha of each residue Problem with ./download_lib.pl ›
Thu, 04/22/2021 - 04:05 — louis_Lu

Thanks

That' s of great help to me, Many thanks for you help!

Thu, 04/15/2021 - 09:16 — zcx

spring

The PDB structures of Threpp is predicted by SPRING, which is available as standalone package at
https://zhanglab.ccmb.med.umich.edu/spring/package/

Fri, 04/16/2021 - 05:00 — louis_Lu

Download of the package has been Forbidden

Thanks, but it seems that I have no permission to download the SPRING package.

Fri, 04/16/2021 - 23:43 — xiaogenz

It works now

I just solved the probem. Please try again!

Sat, 04/17/2021 - 05:57 — louis_Lu

Template libraries for SPRING can not be downloaded

the Template libraries for SPRING(amino-library.tar.bz2, pdb.tar.bz2 and SPRING.tar.bz2) located in the same page can not be accessed yet. Could you solve this problem?

Mon, 04/19/2021 - 12:54 — xiaogenz

It works now

Please try again!