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Contents
Contents
CCMB Cluster Usage Guide
Jonathan Poisson
08/23/10
ContentsTable of Contents
Contents
The Raw Basics
Logging into the Cluster
Copying files to and from the Cluster
Copying from the Cluster
Using the Cluster - Basic
Understanding the Cluster
Understanding Storage
Understanding the Head Node
Understanding the Compute Nodes
Whats in a Name
Unix Commands
man
apropos
df
du
ls
cd and pwd
cp
rm
screen
Job Submission
A Note On Language
Queue commands - Basic
qstat Basics
qsub Basics
Job Submission - Doing something useful
Getting started - BLAST
Job submission - Requesting resources
Getting Started - Discovering Queues
Requesting Resources - Reference
Requesting Queues
Requesting Walltime
Requesting Multiple Nodes and cpus
Requesting Multiple Nodes and CPUs - Advanced
Explicitly Assigning Slices to Separate Nodes
Explicitly Restricting a Node to a Single Job
About this document ...
2010-08-27
