Zhanglab forum

Hi, when I read the code, I found a problem, probably an error, about 360+ lines in MSA_combination.py fscore=0.0 Nchain=0 for i in range(0,len(nrchains)): fscore=copys[nrchains[i]]*pLDDT_dict[nrchains[i]][combined_MSA_Tag[i]] Nchain+=copys[nrchains[i]] fscore=copys[nrchains[i]]*pLDDT_dict[nrchains[...

Hi, I was recently trying to predict protein complex using DMFold, and when I went to Step 2: Run_DeepMSA2.py, found that in the AF2 ranking step, there are some msa af2 predictions run templates_benchmark.py, such as aMSA, tthis should be the template search? I0228 09:50:03.548033 46951213820416 te...

Hello, I follow the steps in DeepMSA2-multimer, and after Step 3: MSA_combination.py, I get the ranking of protein complex MSA, and each ranking contains 3 types of MSA: paired.aln, full_paired.aln, full_paired_pad.aln, how do I get the pdb prediction after I have these data? Is it possible to add a...