Zhanglab forum

For the Binding Site Number Code, I am still a bit confused. When I look at pdb 2y41 (below is part of the pdb information of the ligands), chain A has 2 ligands(IPM and MN), chain B has 4 ligands(IPM,MN,MN,MN). These I suppose that they should have the following binding site number code: Chain A (B...

For your response regarding "Ligand serial number": I think you are referring to the "Residue sequence number of the ligand (field _atom_site.auth_seq_id in PDBx/mmCIF format)" in the readme file provided from your website (https://zhanggroup.org/BioLiP/download/readme.txt) but n...

Hello, Thanks for your great work on the BioLip database! In the dataset I downloaded from your website, there are two columns: “Binding Site Number Code” and “Ligand serial number”. After reading the descriptions provided for the two columns, I’m still not sure what they are referring to. Could you...