Zhanglab forum

Based on my knowledge, the newest NR database in NCBI is design for most recent version blast, so it is not suitable for the blast we including in the PSSpred package, I suggest you download the raw NR fasta file and format it as blast database format by "fomatdb" commands in blast package...

Based on your current message, you need install module numpy to your python2, also please make sure you install pytorch in your python3, I suggest you install anaconda2 and anaconda3 python, those python package include most of the useful module, except pytorch you need install by yourself

Hi Thank you for using our package could you first show the "ls" results of /home/michael/ITLIB and the files in metaclust, uniref90, uniclust etc It seems you also didn't install your own python2 and python3m where python3 is used for deep-learning predictors, you can check the readme abo...

Yes, you can use the standalone package of https://zhanggroup.org/C-I-TASSER/, or you can put your sequence to FUpred server to predicted the domains first, then put each individual domain to C-I-TASSER server, then use DEMO server assembles the domains, all the servers and standalone package can be...

You can try the standalone package of https://zhanggroup.org/C-I-TASSER/

Let me know what's the error information when you run deepmsa solely.

Thank you

all your LOMETS jobs have been complete

Instead, you can try https://zhanggroup.org/FUpred/ (contact-map based method) or detect templates from https://zhanggroup.org/LOMETS then check the domain from template alignment

your job in C-QUARK server is ready here https://zhanggroup.org/C-QUARK/output/QB1277/, some time your email administer may block our email without any notice to you, you can change to another email, we currently accept any kind of email

Hi, you can try another email, we current accept any kind of email. sometime, your administer of the email may block our email, we found this case serval times from different users.