Search found 157 matches
- Fri May 21, 2021 2:39 am
- Forum: Main Forum
- Topic: Estimated time for STRUM job completion
- Replies: 3
- Views: 3338
Re: Estimated time for STRUM job completion
Sorry! The server seems down now. You can try to download the standalone package and run it in your computer.
- Fri May 21, 2021 2:23 am
- Forum: Main Forum
- Topic: Cannot view results
- Replies: 4
- Views: 3670
Re: Cannot view results
Sorry. Here is a problem of the reuslt page generation. Here is the link: https://zhanglab.dcmb.med.umich.edu/I-T ... 69/r2pc88/
- Wed May 19, 2021 5:05 am
- Forum: Main Forum
- Topic: Contacts and Distance Restrictions Option
- Replies: 1
- Views: 2004
Re: Contacts and Distance Restrictions Option
I think it is possible that the I-TASSER restraints has a stronger weight than your provided restraints. So the simulation forced the model folding according to the I-TASSER force filed.
- Sun May 16, 2021 4:50 am
- Forum: Main Forum
- Topic: ftp server refuse connection (for download_lib.pl)
- Replies: 2
- Views: 2635
Re: ftp server refuse connection (for download_lib.pl)
Please change line 102 to "system("wget -o log -c http://zhanglab.ccmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; "
- Tue May 11, 2021 12:50 am
- Forum: Main Forum
- Topic: errors in the deepmsa code
- Replies: 2
- Views: 3608
Re: errors in the deepmsa code
This is not an error. s is a default parameter as we only use the the sequence identity (seqID) cutoff of 30%. s=1.12 equals to the seqID = 30%.
- Tue May 11, 2021 12:30 am
- Forum: Main Forum
- Topic: output interpretation
- Replies: 7
- Views: 7389
Re: output interpretation
The predicted secondary structure can be found in "seq.psi.ss" and "seq.pss.ss". Top ranked templates used by I-TASSER can be found in "init.dat". "Top 5 Models predicted by I-TASSER" named as "REF_mode1.pdb" or "model1.pdb". The final mode...
- Tue May 11, 2021 12:24 am
- Forum: Main Forum
- Topic: Processing Delay
- Replies: 1
- Views: 3613
Re: Processing Delay
It was completed on 03/04/21. The result may not be sent because the connection between the two servers failed. I attached the top five models due to the file size limitataion. Please contact us if you need other results.
- Tue May 11, 2021 12:13 am
- Forum: Main Forum
- Topic: Email Notification of results, only processing page visible
- Replies: 1
- Views: 3672
Re: Email Notification of results, only processing page visible
Sorry! There is a problem of the result page generation. I have attached the top five models due to the filesize limitation. Please let us know if you need other results.
- Fri May 07, 2021 6:24 pm
- Forum: Main Forum
- Topic: Can't access the i-TASSER results
- Replies: 2
- Views: 4101
Re: Can't access the i-TASSER results
Here is the result page.
https://zhanglab.dcmb.med.umich.edu/I-T ... 97/vys8jk/
And please check whether the email has been intercepted.
https://zhanglab.dcmb.med.umich.edu/I-T ... 97/vys8jk/
And please check whether the email has been intercepted.
- Fri May 07, 2021 6:11 pm
- Forum: Main Forum
- Topic: Protein-Ligand Complex Not Available in I-TASSER Output
- Replies: 1
- Views: 3771
Re: Protein-Ligand Complex Not Available in I-TASSER Output
Sorry. There is someting wrong when generate the result page. I have modified the link. You can download them now. Aslo, the results are included in the file named 'S613036_results.tar.bz2'. You can click the link below the title of the page to download it.