runtime error in DeepMSA 2.1
Posted: Tue Mar 26, 2024 11:08 am
I downloaded the DeepMSA2 2.1 package, downloaded the data set, and installed the environment. Copied example2/seq.fasta to example3 and ran DeepMSA_noIMG on it. After 3 iterations, Segmentation Fault appeared, which was the error reported by qhmmbuild. In the end, qMSA.hmsa3m and qMSA.hmsaln were not generated. The run that caused the error was as follows:
Also, at the beginning of the program, there is the following warning, is this a possible reason?
Best
Yang Wan
Code: Select all
sed = /tmp/root/MSA_2317394802/jackblits.aln |sed 'N;s/\n/\t/'|sed 's/^/>/g'|sed 's/\t/\n/g'|/ root/DeepMSA2/bin/qMSA/bin/qhmmbuild -n aln --amino -O /tmp/root/MSA_2317394802/hmmsearch.afq --informat afa /tmp/root/MSA_2317394802/hmmsearch.hmm -
Code: Select all
No such file /root/DeepMSA2/database/UniRef30_2022_02/UniRef30_2022_02.cs219
Fall back to hhblits3. Result may be affected.
Yang Wan