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DeepMSA2 and DMFold questions about DeepMSA2_noIMG.py
Posted: Thu Apr 11, 2024 9:19 am
by make110980006
Why DeepMSA2 file's didn't have aMSA generate code yet the readme mentioned that it will output aMSA.*a3m/aln, dMSA.*a3m/aln, and qMSA.*a3m/aln. Also without the result, it will not get into the next step to run DeepMSA2_IMG.py
Re: DeepMSA2 and DMFold questions about DeepMSA2_noIMG.py
Posted: Fri Apr 12, 2024 3:57 pm
by jlspzw
Dear user,
DeepMSA2 doesn't contains aMSA, the readme file has some typo, we will delete it from readme.
DeepMSA_IMG.py does not require aMSA. qMSA and dMSA is enough for next step. if you only have qMSA.hhb* dMSA.hhb* and do not have d/qMSA.jac* and others, DeepMSA_IMG.py will tell you no need to do IMG search.
Let us know if you have any question.
Best Regards
Wei Zheng