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How much longer does it take for I-TASSER to generate each additional .pdb file?

Posted: Wed Jun 16, 2021 8:55 pm
by DavidB256
Hello! If I choose to generate, for example, 2 .pdb files instead of 1 .pdb file for my protein sequence with I-TASSER, how much longer should I expect for the modeling job to take? I am running I-TASSER on a local supercomputer with 14 CPUs. Thanks!

Re: How much longer does it take for I-TASSER to generate each additional .pdb file?

Posted: Thu Jun 17, 2021 5:48 pm
by xiaogenz
It depends on the length of the query protein and your running mode (parallel or unparallel ) for the threading and simulation. Results are usually available within 48 hours.