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BioLiP Has Fewer Entries Than Before

Posted: Mon Oct 23, 2023 9:35 pm
by gcyoung
I noticed that the BioLiP database has 420307 ligand entries now, as compared to 454406 on July 20 (https://web.archive.org/web/20230720112 ... /index.cgi). Were some entries removed?

Re: BioLiP Has Fewer Entries Than Before

Posted: Wed Oct 25, 2023 12:51 am
by zcx@umich.edu
Yes, some entries are removed due to correction of van deer Waals radius calculation.
https://github.com/kad-ecoli/mmCIF2BioL ... d9349c02c9

Re: BioLiP Has Fewer Entries Than Before

Posted: Wed Oct 25, 2023 2:58 pm
by gcyoung
Ok, good to know.